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Project Title:  Automated Deep Learning for Spaceflight Rodent Behavior Quantification and Health Phenotyping Reduce
Images: icon  Fiscal Year: FY 2025 
Division: Human Research 
Research Discipline/Element:
HRP HFBP:Human Factors & Behavioral Performance (IRP Rev H)
Start Date: 11/15/2023  
End Date: 11/14/2025  
Task Last Updated: 10/14/2024 
Download Task Book report in PDF pdf
Principal Investigator/Affiliation:   Pereira, Talmo  Ph.D. / Salk Institute for Biological Studies 
Address:  10010 North Torrey Pines Road 
 
La Jolla , CA 92037-1002 
Email: talmo@salk.edu 
Phone: 954-621-6604  
Congressional District: 50 
Web:  
Organization Type: UNIVERSITY 
Organization Name: Salk Institute for Biological Studies 
Joint Agency:  
Comments:  
Co-Investigator(s)
Affiliation: 
Saunders, Lauren  Ph.D. NASA Ames Research Center 
Scott, Ryan  M.A. NASA Ames Research Center 
Project Information: Grant/Contract No. 80NSSC24K0346 
Responsible Center: NASA JSC 
Grant Monitor: Whitmire, Alexandra  
Center Contact:  
alexandra.m.whitmire@nasa.gov 
Unique ID: 15772 
Solicitation / Funding Source: 03-OBPR-02 
Grant/Contract No.: 80NSSC24K0346 
Project Type:  
Flight Program:  
No. of Post Docs:
No. of PhD Candidates:
No. of Master's Candidates:
No. of Bachelor's Candidates:
No. of PhD Degrees:
No. of Master's Degrees:
No. of Bachelor's Degrees:
Human Research Program Elements: (1) HFBP:Human Factors & Behavioral Performance (IRP Rev H)
Human Research Program Risks: (1) BMed:Risk of Adverse Cognitive or Behavioral Conditions and Psychiatric Disorders
Human Research Program Gaps: (1) BMed-101:Identify, quantify, and validate key selection factors for requisite performance on increasingly Earth-independent, long-duration, autonomous, and/or long-distance exploration missions
(2) BMed-102:Identify and characterize key C/P/Psy/N outcome measures (biomarkers) and domains of relevance that are at risk due to spaceflight environmental stressors in exploration class missions and determine validated thresholds for identified biomarkers of adverse C/P/Psy/N outcomes to enable mission objectives and identify indicators of risk before progression to clinical levels of impairment.
(3) BMed-103:Identify validated, evidence-based countermeasures to prevent or treat adverse C/P/Psy/N conditions caused by single or combined exposures to spaceflight environmental stressors.
(4) BMed-104:Identify design features and requirements of the habitat/vehicle and mission architecture to mitigate stressors impacting C/P/Psy/N health.
(5) BMed-105:Identify validated medical or dietary countermeasures to mitigate spaceflight environmental stressors impacting C/P/Psy/N health.
(6) BMed-106:Identify effective strategies to maintain personal relations/interactions to mitigate adverse C/P/Psy/N outcomes during increasingly Earth-independent long duration missions.
(7) BMed-107:Determine long-term changes and risks to astronaut health post-mission that retrospectively predicts individual susceptibility to adverse C/P/Psy/N outcomes and informs countermeasure implementation in current and future crews.
(8) BMed-108:Identify and characterize the potential impacts of combined spaceflight environmental stressors to inform both validated threshold limits and countermeasure for adverse C/P/Psy/N outcomes.
Flight Assignment/Project Notes: NOTE: End date changed to 11/14/2025 per L. Juliette/HFBP (Ed., 12/19/24).

Task Description: Spaceflight isolation and confinement increase the risk of behavioral health impairments and pose major hurdles for crewed deep space missions. To reduce these risks, further research is needed on the effects of spaceflight on psychiatric and behavioral health in order to develop systems for monitoring crew health and performance. This proposal aims to address this gap by applying artificial intelligence (AI)-based technology to enable automated behavioral quantification and health monitoring from spaceflight videos.

Powered by state-of-the-art deep learning and computer vision technology, the proposed platform will leverage previous work on automated markerless motion capture (i.e., whole body movement tracking from video) and behavioral phenotyping (i.e., detection of behavior events such as walking or eating). This technology has been used for video-based behavioral analysis in insects, fish, plants, rodents, and humans, including for applications such as health monitoring in animal studies of cancer and neurodegeneration.

The proposed work will demonstrate the feasibility of using this technology to automate spaceflight behavioral health monitoring by applying it to previously collected videos from the NASA Rodent Research-1 mission. These have been painstakingly manually annotated by human expert observers with frame-by-frame labels of behaviors (e.g., feeding, grooming) to enable quantitative analysis of rodent behavior during spaceflight. This laborious effort was necessary due to the challenging imaging conditions inherent in spaceflight videography – but which are overcome through the use of AI in the proposed work. By developing a platform capable of automating this process, we will establish the foundation for future systems that will be able to monitor behavioral health in research missions – automatically and in real-time, opening the door to interventional studies aimed at maintaining positive behavioral health conditions. Future work may adapt this technology for behavioral monitoring in humans to detect and mitigate the risks of crewed deep space missions.

Research Impact/Earth Benefits: This work is significant to the solicitation objectives as it directly addresses the Human Research Roadmap "Risk of Adverse Cognitive or Behavioral Conditions and Psychiatric Disorders." Successful completion of this project will enable automated rodent health checks and disease onset identification in spaceflight environments, potentially saving hundreds of hours of personnel time in future missions.

Furthermore, this research lays the groundwork for adapting the technology to enable human health and behavioral performance monitoring in upcoming crewed deep space missions. The proposed work is also valuable to the Institutional Animal Care and Use Committee and the Rodent Research Project as it fills a critical technology gap.

By leveraging existing flight data from the RR-1 mission, this project will validate the applicability of AI-based behavioral analysis tools to other existing and upcoming RR missions. This approach not only benefits future missions but also increases the utility of data collected in past missions, supporting NASA's goals of maximizing the scientific return from spaceflight experiments and advancing our understanding of biological responses to the space environment.

Task Progress & Bibliography Information FY2025 
Task Progress: We have made significant progress in the following areas: 1) Development of Pose Tracking Pipeline for Spaceflight Rodent Behavior 2) Evaluation of Pose Tracking Performance 3) Automated Behavior Detection 4) Identification of Improvement Areas 5) Protocol Development 6) Dataset Publication

The accomplishments we have made in these areas demonstrate the feasibility of automating motion capture-based analysis of animal behavior in microgravity under challenging imaging conditions. Our work has set a foundation for future improvements in behavioral monitoring systems for spaceflight research.

Future plans: This work will be fully described in a manuscript set to be submitted this year, and is touched on in a perspective that is under revision at npj Microgravity. Future plans also include completed estimation of 3D Kinematics.

Bibliography: Description: (Last Updated: ) 

Show Cumulative Bibliography
 
 None in FY 2025
Project Title:  Automated Deep Learning for Spaceflight Rodent Behavior Quantification and Health Phenotyping Reduce
Images: icon  Fiscal Year: FY 2024 
Division: Human Research 
Research Discipline/Element:
HRP HFBP:Human Factors & Behavioral Performance (IRP Rev H)
Start Date: 11/15/2023  
End Date: 11/14/2024  
Task Last Updated: 12/14/2023 
Download Task Book report in PDF pdf
Principal Investigator/Affiliation:   Pereira, Talmo  Ph.D. / Salk Institute for Biological Studies 
Address:  10010 North Torrey Pines Road 
 
La Jolla , CA 92037-1002 
Email: talmo@salk.edu 
Phone: 954-621-6604  
Congressional District: 50 
Web:  
Organization Type: UNIVERSITY 
Organization Name: Salk Institute for Biological Studies 
Joint Agency:  
Comments:  
Co-Investigator(s)
Affiliation: 
Saunders, Lauren  Ph.D. NASA Ames Research Center 
Scott, Ryan  M.A. NASA Ames Research Center 
Project Information: Grant/Contract No. 80NSSC24K0346 
Responsible Center: NASA JSC 
Grant Monitor: Whitmire, Alexandra  
Center Contact:  
alexandra.m.whitmire@nasa.gov 
Unique ID: 15772 
Solicitation / Funding Source: 03-OBPR-02 
Grant/Contract No.: 80NSSC24K0346 
Project Type:  
Flight Program:  
No. of Post Docs:  
No. of PhD Candidates:  
No. of Master's Candidates:  
No. of Bachelor's Candidates:  
No. of PhD Degrees:  
No. of Master's Degrees:  
No. of Bachelor's Degrees:  
Human Research Program Elements: (1) HFBP:Human Factors & Behavioral Performance (IRP Rev H)
Human Research Program Risks: (1) BMed:Risk of Adverse Cognitive or Behavioral Conditions and Psychiatric Disorders
Human Research Program Gaps: (1) BMed-101:Identify, quantify, and validate key selection factors for requisite performance on increasingly Earth-independent, long-duration, autonomous, and/or long-distance exploration missions
(2) BMed-102:Identify and characterize key C/P/Psy/N outcome measures (biomarkers) and domains of relevance that are at risk due to spaceflight environmental stressors in exploration class missions and determine validated thresholds for identified biomarkers of adverse C/P/Psy/N outcomes to enable mission objectives and identify indicators of risk before progression to clinical levels of impairment.
(3) BMed-103:Identify validated, evidence-based countermeasures to prevent or treat adverse C/P/Psy/N conditions caused by single or combined exposures to spaceflight environmental stressors.
(4) BMed-104:Identify design features and requirements of the habitat/vehicle and mission architecture to mitigate stressors impacting C/P/Psy/N health.
(5) BMed-105:Identify validated medical or dietary countermeasures to mitigate spaceflight environmental stressors impacting C/P/Psy/N health.
(6) BMed-106:Identify effective strategies to maintain personal relations/interactions to mitigate adverse C/P/Psy/N outcomes during increasingly Earth-independent long duration missions.
(7) BMed-107:Determine long-term changes and risks to astronaut health post-mission that retrospectively predicts individual susceptibility to adverse C/P/Psy/N outcomes and informs countermeasure implementation in current and future crews.
(8) BMed-108:Identify and characterize the potential impacts of combined spaceflight environmental stressors to inform both validated threshold limits and countermeasure for adverse C/P/Psy/N outcomes.
Task Description: Spaceflight isolation and confinement increase the risk of behavioral health impairments and pose major hurdles for crewed deep space missions. To reduce these risks, further research is needed on the effects of spaceflight on psychiatric and behavioral health in order to develop systems for monitoring crew health and performance. This proposal aims to address this gap by applying artificial intelligence (AI)-based technology to enable automated behavioral quantification and health monitoring from spaceflight videos.

Powered by state-of-the-art deep learning and computer vision technology, the proposed platform will leverage previous work on automated markerless motion capture (i.e., whole body movement tracking from video) and behavioral phenotyping (i.e., detection of behavior events such as walking or eating). This technology has been used for video-based behavioral analysis in insects, fish, plants, rodents, and humans, including for applications such as health monitoring in animal studies of cancer and neurodegeneration.

The proposed work will demonstrate the feasibility of using this technology to automate spaceflight behavioral health monitoring by applying it to previously collected videos from the NASA Rodent Research-1 mission. These have been painstakingly manually annotated by human expert observers with frame-by-frame labels of behaviors (e.g., feeding, grooming) to enable quantitative analysis of rodent behavior during spaceflight. This laborious effort was necessary due to the challenging imaging conditions inherent in spaceflight videography – but which are overcome through the use of AI in the proposed work. By developing a platform capable of automating this process, we will establish the foundation for future systems that will be able to monitor behavioral health in research missions – automatically and in real-time, opening the door to interventional studies aimed at maintaining positive behavioral health conditions. Future work may adapt this technology for behavioral monitoring in humans to detect and mitigate the risks of crewed deep space missions.

Research Impact/Earth Benefits:

Task Progress & Bibliography Information FY2024 
Task Progress: New Project for FY2024

Bibliography: Description: (Last Updated: ) 

Show Cumulative Bibliography
 
 None in FY 2024